PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0552s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ZF-HD
Protein Properties Length: 350aa    MW: 38635.4 Da    PI: 8.2451
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0552s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer109.42e-3482139359
             ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                              ++YkeClkNhAa++Ggha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre+e+
  SapurV1A.0552s0010.1.p  82 VITYKECLKNHAATIGGHALDGCGEFMPSPTAThTDPTSLKCAACGCHRNFHRREPED 139
                             579***************************9999********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257748.0E-2383136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.4E-2883137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-3184136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.94485136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.79E-19212281IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-30212282IPR009057Homeodomain-like
TIGRFAMsTIGR015651.7E-26220277IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDVTPTTATA EAVATATTPT PTNNNTNTTI PKSPDVDTAT PTRIPQSKPL SFTNGFLKRH  60
PPHHHHHHHH HHLFSPPPPP TVITYKECLK NHAATIGGHA LDGCGEFMPS PTATHTDPTS  120
LKCAACGCHR NFHRREPEDF TPHTTAMATI EYQPHHRHHP PPPQAQPQHN RSPNSASPPP  180
ISSSYYPSAP HMLLALSGGV SGLNENVNIN APPPAGSSPR KRFRTKFSQS QKERMHQFAE  240
KVGWKMQKRD EDWVQEFCNE VGVDRSVLKV WMHNNKNNSG KKEHLNGNND EIIRSSNLEN  300
SYSNNESNKN ITNNNNNGTE GLNHNQNHHH FENDSHVAHV GTNGSSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-202212781875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2272360.0CU227236.1 Populus EST from severe drought-stressed leaves.
GenBankCU2288270.0CU228827.1 Populus EST from severe drought-stressed leaves.
GenBankCU2290160.0CU229016.1 Populus EST from severe drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010943.11e-157PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LXG03e-74ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLB9H0F61e-155B9H0F6_POPTR; Uncharacterized protein
STRINGPOPTR_0004s12500.11e-155(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.15e-68homeobox protein 34